{ "_id": "6a156bacacfb0bcc41d63a75", "Package": "SESraster", "Title": "Raster Randomization for Null Hypothesis Testing", "Version": "0.7.1", "Authors@R": "c(\nperson(c(\"Neander\", \"Marcel\"), \"Heming\", email = \"neanderh@yahoo.com.br\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-2461-5045\")),\nperson(c(\"Flávio\", \"M.\", \"M.\"), \"Mota\", email = \"flaviomoc@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0308-7151\")),\nperson(\"Gabriela\", \"Alves-Ferreira\", email = \"gabriela-alves77@hotmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-5661-3381\"))\n)", "Description": "Randomization of presence/absence species distribution\nraster data with or without including spatial structure for\ncalculating standardized effect sizes and testing null\nhypothesis. The randomization algorithms are based on classical\nalgorithms for matrices (Gotelli 2000, )\nimplemented for raster data.", "License": "GPL (>= 3)", "URL": "https://CRAN.R-project.org/package=SESraster,\nhttps://github.com/HemingNM/SESraster,\nhttps://hemingnm.github.io/SESraster/", "BugReports": "https://github.com/HemingNM/SESraster/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.1", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev", "Repository": "https://hemingnm.r-universe.dev", "Date/Publication": "2024-10-21 22:22:01 UTC", "RemoteUrl": "https://github.com/hemingnm/sesraster", "RemoteRef": "HEAD", "RemoteSha": "214f53d1a452da594eba979f737dca1d8a18ab35", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 09:41:35 UTC", "User": "root" }, "Author": "Neander Marcel Heming [aut, cre, cph] (ORCID:\n),\nFlávio M. M. Mota [aut] (ORCID:\n),\nGabriela Alves-Ferreira [aut] (ORCID:\n)", "Maintainer": "Neander Marcel Heming ", "MD5sum": "3ed6d734289d9baa5c9b428a0aca6dd7", "_user": "hemingnm", "_type": "src", "_file": "SESraster_0.7.1.tar.gz", "_fileid": "99036dfd06386d0d0aa1ce3a29aa9d07a20c3bde62950240a2f7e0d17762f296", "_filesize": 1700042, "_sha256": "99036dfd06386d0d0aa1ce3a29aa9d07a20c3bde62950240a2f7e0d17762f296", "_created": "2026-05-26T09:41:35.000Z", "_published": "2026-05-26T09:45:16.877Z", "_distro": "noble", "_jobs": [ { "job": 77847973474, "time": 164, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7213839442" }, { "job": 77847973544, "time": 175, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7213843486" }, { "job": 77847973462, "time": 139, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7213825457" }, { "job": 77847973516, "time": 184, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7213836422" }, { "job": 77847422876, "time": 200, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7213783800" }, { "job": 77847973475, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7213823179" }, { "job": 77847973470, "time": 118, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7213824156" }, { "job": 77847973477, "time": 115, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7213823255" }, { "job": 77847973529, "time": 122, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7213826419" } ], "_buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/hemingnm/sesraster", "_commit": { "id": "214f53d1a452da594eba979f737dca1d8a18ab35", "author": "Neander M. Heming <31964343+HemingNM@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #7 from HemingNM/SESfunc\n\nSesfunc", "time": 1729549321 }, "_maintainer": { "name": "Neander Marcel Heming", "email": "neanderh@yahoo.com.br", "login": "hemingnm", "description": "Biologist that need some programming for data analysis.", "uuid": 31964343, "orcid": "0000-0003-2461-5045" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "kableExtra", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "hemingnm", "_selfowned": true, "_usedby": 2, "_updates": [], "_tags": [], "_topics": [ "null-models", "randomization", "raster", "spatial", "spatial-analysis", "species-distribution-modelling" ], "_stars": 8, "_contributors": [ { "user": "hemingnm", "count": 118, "uuid": 31964343 }, { "user": "flaviomoc", "count": 6, "uuid": 81574057 }, { "user": "gabferreira", "count": 3, "uuid": 70015808 } ], "_userbio": { "uuid": 31964343, "type": "user", "name": "Neander M. Heming", "description": "Biologist that need some programming for data analysis." }, "_downloads": { "count": 621, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SESraster" }, "_devurl": "https://github.com/hemingnm/sesraster", "_pkgdown": "https://hemingnm.github.io/SESraster/", "_searchresults": 32, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SESraster.html", "manual.pdf" ], "_homeurl": "https://github.com/hemingnm/sesraster", "_realowner": "hemingnm", "_cranurl": true, "_releases": [ { "version": "0.6.1", "date": "2023-06-22" }, { "version": "0.6.2", "date": "2023-07-06" }, { "version": "0.7.0", "date": "2023-08-10" }, { "version": "0.7.1", "date": "2024-10-22" } ], "_exports": [ "algorithm_metrics", "bootspat_ff", "bootspat_naive", "bootspat_str", "fit.memory", "fr2prob", "load_ext_data", "plot_alg_metrics", "SESraster" ], "_help": [ { "page": "algorithm_metrics", "title": "Performance of randomization algorithms", "topics": [ "algorithm_metrics" ] }, { "page": "bootspat_ff", "title": "Spatially structured fixed-fixed sample", "topics": [ "bootspat_ff" ] }, { "page": "bootspat_naive", "title": "Randomize a set of rasters according to the observed frequency.", "topics": [ "bootspat_naive" ] }, { "page": "bootspat_str", "title": "Spatially structured sample", "topics": [ "bootspat_str" ] }, { "page": "fit.memory", "title": "Function to evaluate if the rasters generated in the function fit on RAM memory", "topics": [ "fit.memory" ] }, { "page": "fr2prob", "title": "Adjust probability of sampling based on frequency of occurrences.", "topics": [ "fr2prob" ] }, { "page": "load_ext_data", "title": "Load SESraster external datasets", "topics": [ "load_ext_data" ] }, { "page": "plot_alg_metrics", "title": "Plot performance of randomization algorithms", "topics": [ "plot_alg_metrics" ] }, { "page": "SESraster", "title": "Standardized effect sizes for SpatRaster objects", "topics": [ "SESraster" ] } ], "_pkglogo": "https://github.com/hemingnm/sesraster/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/hemingnm/sesraster/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "rlang", "terra" ], "_vignettes": [ { "source": "null-models.Rmd", "filename": "null-models.html", "title": "Null model algorithms", "author": "Neander M. Heming, Flávio Mota, and Gabriela Alves-Ferreira", "engine": "knitr::rmarkdown", "headings": [ "Contents", "Introduction", "Algorithms", "Spatial null model algorithms in SESraster", "References" ], "created": "2023-07-17 14:42:02", "modified": "2023-07-21 19:37:57", "commits": 4 }, { "source": "spatial-null-models.Rmd", "filename": "spatial-null-models.html", "title": "Spatial null model algorithms in SESraster", "author": "Neander M. Heming, Flávio Mota, and Gabriela Alves-Ferreira", "engine": "knitr::rmarkdown", "headings": [ "Contents", "Installation", "Analysis", "Random species generation", "Spatially Unstructured Randomization", "Equiprobable-Equiprobable: by site and species simultaneously", "Fixed-Equiprobable: by species", "Equiprobable-Fixed: by site", "Spatially Structured Randomization", "Fixed-Proportional: function bootspat_str()", "Fixed-Fixed: function bootspat_ff()", "Standardized effect sizes", "References" ], "created": "2023-07-17 14:42:02", "modified": "2023-07-20 22:04:05", "commits": 3 }, { "source": "SES.Rmd", "filename": "SES.html", "title": "Standardized effect sizes", "author": "Neander M. Heming, Flávio Mota, and Gabriela Alves-Ferreira", "engine": "knitr::rmarkdown", "headings": [ "Contents", "Standardized effect size", "Calculating SES", "Random species generation", "SES with spatial randomization", "Passing arguments to FUN", "SES from species trait randomization", "Conclusion", "References" ], "created": "2023-07-17 14:42:02", "modified": "2023-07-17 18:52:55", "commits": 2 } ], "_score": 6.663512470415156, "_indexed": true, "_nocasepkg": "sesraster", "_universes": [ "hemingnm" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.7.1", "date": "2026-05-26T09:43:52.000Z", "distro": "noble", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "6903c0e5847b10df25e148afaf72704fcf33c280031f3a8a2739e57bcf4e2e52", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.6.0", "os": "linux", "version": "0.7.1", "date": "2026-05-26T09:44:06.000Z", "distro": "noble", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "c351f497b5abdb22c7c1f7f14ea4a6af815345e4f74593a8fba5b63a2fd06c8e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.5.3", "os": "mac", "version": "0.7.1", "date": "2026-05-26T09:43:30.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "a7dfe9313a755600c3f86fabdf7dfc2ef8984cb57ce38729c2cbc66b2af1df98", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.6.0", "os": "mac", "version": "0.7.1", "date": "2026-05-26T09:43:53.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "1755dc431f38b52c214a2d0215395ad88cd4a27ffcfccb9abbe68b5c90a9d2e0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.6.0", "os": "wasm", "version": "0.7.1", "date": "2026-05-26T09:43:45.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "71d0f4c6a35a6db30cfcd34d10fa167f7647a0c0dd9d3624a5fdd2d08aa1a6ab", "status": "success", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.7.0", "os": "win", "version": "0.7.1", "date": "2026-05-26T09:42:58.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "aeddc878c92c5b116cf6cec039137a0ebc69d80d42dcfd1e9d769c4717966736", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.5.3", "os": "win", "version": "0.7.1", "date": "2026-05-26T09:42:58.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "0a7341eb532557139ad5ab59cefb8aec526a4c53a3288d16161cd1914c4299a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" }, { "r": "4.6.0", "os": "win", "version": "0.7.1", "date": "2026-05-26T09:43:07.000Z", "commit": "214f53d1a452da594eba979f737dca1d8a18ab35", "fileid": "cd921e85336254601e1b9989d0c24e8d6ad1e307b5351afef575995b2db03b27", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hemingnm/actions/runs/26444555303" } ] }